搜索页_ Neighbor-joining (NJ)

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在“Elsevier”中，命中：17条，耗时：0.0809572 秒

1.Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships

作者：Apostolos Beloukas^a ; Emmanouil Magiorkinis^a ; Gkikas Magiorkinis^a ; ^b ; Asimina Zavitsanou^a ; Timokratis Karamitros^a ; Angelos Hatzakis^a ; Dimitrios Paraskevis^a ; ^{dparask@med.uoa.gr}

关键词：Phylogenetic analysis ; Phylogenetic sensitivity ; Neighbor-joining (NJ) ; Maximum likelihood heuristics (hML) ; Bayesian

刊名：Virus Research

出版年：2012

2.Comparison of Boolean analysis and standard phylogenetic methods using artificially evolved and natural mt-tRNA sequences from great apes

作者：Eszter Ari^a ; ^{arieszter@gmail.com} ; Pé ; ter Ittzé ; s^b ; Já ; nos Podani^b ; ^c ; Quynh Chi Le Thi^b ; É ; ena Jakó ; ^b

关键词：BOOL-AN ; Boolean analysis ; ED ; Euclidean distance ; ICF ; Iterative Canonical Forms of Boolean functions ; IGD ; ICF graph distance ; JD ; Jaccard distance ; ML ; Maximum-Likelihood ; MP ; Maximum Parsimony ; mt-tRNA ; mitochondrial transfer-RNA ; NJ ; Neighbor-Joining

刊名：Molecular Phylogenetics and Evolution

出版年：2012

3.Random local neighbor joining: A new method for reconstructing phylogenetic trees

作者：Wei Zhang ; Zhirong Sun

关键词：Random local neighbor joining ; Neighbor joining ; Minimum evolution ; Phylogenetic reconstruction ; Reliability

刊名：Molecular Phylogenetics and Evolution

出版年：2008

4.Detection of members of the Secoviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA

作者：Vaskar Thapa^a ; ¹ ; ^{vaskar.thapa@okstate.edu} ; Ulrich Melcher^b ; ^{u-melcher-4@alumni.uchicago.edu} ; ^{ulrich.melcher@okstate.edu} ; Graham B. Wiley^c ; ² ; ^{wileyg@omrf.org} ; Andrew Doust^a ; ^{andrew.doust@okstate.edu} ; Michael W. Palmer^a ; ^{mike.palmer@okstate.edu} ; Kimberly Roewe^b ; ³ ; ^{kimberly.roewe@okstate.edu} ; Bruce A. Roe^c ; ^broe@ou.edu ; Guoan Shen^d ; ^{gshen@noble.org} ; Marilyn J. Roossinck^d ; ⁴ ; ^{mjr25@psu.edu} ; Ye Margaret Wang^b ; ⁵ ; ^{wangye@seas.upenn.edu} ; Nitin Kamath^b ; ⁶ ; ^{nmk38@cornell.edu}

关键词：ICTV ; International Committee for the Taxonomy of Viruses ; PVBE ; Plant Virus Biodiversity and Ecology ; TPP ; Tallgrass Prairie Preserve ; RdRp ; RNA-dependent RNA polymerase ; LCP ; large coat protein ; NJ ; Neighbor Joining ; ML ; Maximum Likelihood ; LG ; Le and G

刊名：Virus Research

出版年：2012

5.Intraregional variation among Alexandrium catenella (Dinophyceae) strains from southern Chile: Morphological, toxicological and genetic diversity

作者：Daniel Varela^a ; ^{dvarela@ulagos.cl} ; ^{daniel.varela7@gmail.com} ; Javier Paredes^a ; Catharina Alves-de-Souza^b ; Miriam Seguel^c ; Andrea Sfeir^c ; Má ; ximo Frangó ; pulos^d

关键词：PSP ; Paralytic Shellfish Poison ; LSU ; large subunit ; ITS ; internal transcribed spacer ; ML ; maximum likelihood ; MP ; maximum parsimony ; NJ ; neighbor joining

刊名：Harmful Algae

出版年：2012

6.Applying DNA barcodes for identification of plant species in the family Araliaceae

作者：Zhihua Liu ; ^{zhliu@implad.ac.cn} ; Xu Zeng ; Dan Yang ; Guiyan Chu ; Zhengrong Yuan ; Shilin Chen

关键词：TCM ; Traditional Chinese Medicine ; ITS ; Internal Transcribed Spacer ; IMPLAD ; Institute of Medicinal Plant Development ; HMM ; Hidden Markov Model ; K2P ; Kimura 2-Parameter ; NJ ; Neighbor-joining ; BS ; Bootstrap Support ; CBOL ; Consortium for the Barcode of Life

刊名：Gene

出版年：2012

7.Structure-based phylogeny of polyene macrolide antibiotic glycosyltransferases

作者：Yanhua Sun^a ; Fanxu Zeng^b ; ^c ; Weiwen Zhang^b ; ^c ; Jianjun Qiao^b ; ^c ; ^{jianjunq@tju.edu.cn}

关键词：AGTs ; antibiotic glycosyltransferases ; AIC ; akaike information criterion ; BIC ; Bayesian information criterion ; CYP450 ; cytochrome P450 ; FGTs ; flavonoid glycosyltransferases ; GT ; glycosyltransferase ; HGT ; horizontal gene transfer ; MCMCMC ; Metropolis-couple

刊名：Gene

出版年：2012

8.Genetic and phylogenetic analysis of South Korean sacbrood virus isolates from infected honey bees (Apis cerana)

作者：Se-Eun Choe^a ; ¹ ; Thuy Thi-Dieu Nguyen^a ; ^b ; ¹ ; ^{ntdthuy@ibt.ac.vn} ; Bang-Hun Hyun^a ; Jin-Hyeong Noh^a ; Hee-Soo Lee^a ; Chang-Hee Lee^a ; Seung-Won Kang^a ; ^{kangsw@korea.kr}

关键词：Honey bee ; Sacbrood virus ; Phylogenetic analysis ; South Korea

刊名：Veterinary Microbiology

出版年：2012

9.The effect of branch lengths on phylogeny: An empirical study using highly conserved orthologs from mammalian genomes

作者：Austin L. Hughes ; Robert Friedman

关键词：Long-branch attraction ; Mammalian phylogeny ; Opposite-branch attraction ; Phylogenetic methods

刊名：Molecular Phylogenetics and Evolution

出版年：2007

10.Phylogenetic analyses of penicillia based on partial calmodulin gene sequences

作者：Long Wang ; Wen-Ying Zhuang

关键词：RSCU ; Cluster analysis ; Evolution ; Speciation ; Eupenicillium ; Talaromyces ; Penicillium

刊名：Biosystems

出版年：2007

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