基于形态和cpDNA序列探讨柽柳和甘蒙柽柳的亲缘关系
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摘要
柽柳科植物的系统学关系已初步明确,但部分种间的系统进化关系仍有待澄清。为明确中国黄河流域广泛分布的柽柳(Tamarix chinensis)和甘蒙柽柳(T. austromongolica)的亲缘关系,利用13个稳定的形态学性状和3个cpDNA间隔区片段(rpl20-5′-rps12, rps16, trn L-trn F)对柽柳科3属9种植物进行研究,结果表明3条序列的位点变异程度依次为trn L-trn F>rps16>rpl20-5′-rps12,柽柳和甘蒙柽柳群体共享有同一单倍型,表型和分子数据均支持柽柳和甘蒙柽柳为单系分支的近缘种,推测柽柳和甘蒙柽柳的分化大致发生在0.69Ma (0-1.93) Ma,与同属内其它物种相比,分化时间相对较晚。
The phylogenetic relationship of Tamariaceae plants has been preliminarily clarified, the relationship among some species remains unclear yet. In order to understand the genetic relationship between Tamarix chinensis and T. austromongolica that both widely distribute along the Yellow River in China, thirteen morphological traits were used to infer the phylogeny of the Tamariaceae family in the present study, DNA sequences from the plastid rpl20-5'-rps12, rps16 and trnL-trnF intergenic spacer were also used in conjunction with the morphological phylogenetic relationships. The analysis revealed that more variation existed in trnL-trnF than that in rps16 and rpl20-5'-rps12; The populations of T. chinensis and T. austromongolica shared the same haplotype; and both of morphology and molecular studies showed that they clustered together within a clade.Furthermore, the estimated divergence time of the two species was about 0.69 Ma(0-1.93) Ma, the divergence time was relatively later compared to other species within the genus.
The phylogenetic relationship of Tamariaceae plants has been preliminarily clarified, the relationship among some species remains unclear yet. In order to understand the genetic relationship between Tamarix chinensis and T. austromongolica that both widely distribute along the Yellow River in China, thirteen morphological traits were used to infer the phylogeny of the Tamariaceae family in the present study, DNA sequences from the plastid rpl20-5'-rps12, rps16 and trnL-trnF intergenic spacer were also used in conjunction with the morphological phylogenetic relationships. The analysis revealed that more variation existed in trnL-trnF than that in rps16 and rpl20-5'-rps12; The populations of T. chinensis and T. austromongolica shared the same haplotype; and both of morphology and molecular studies showed that they clustered together within a clade.Furthermore, the estimated divergence time of the two species was about 0.69 Ma(0-1.93) Ma, the divergence time was relatively later compared to other species within the genus.
引文
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Correa R.P.,Lemos-Filho J.P.,Oliveira B.R.S.,Lovato M.B.,and Heuertz M.,2016,Species-specific phylogeographical patterns and Pleistocene east-west divergence in Annona(Annonaceae)in the Brazilian Cerrado,Bot.J.Linn.Soc.,181(1):21-36
Gaskin J.F.,and Schaal B.A.,2002,Hybrid Tamarix widespread in U.S.invasion and undetected in native Asian range,Proc Natl.Acad.Sci.USA,99(17):11256-11259
Hamilton M.B.,1999,Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation Molecular Ecology,8(3):521-523
Hua L.,Zhang D.Y.,and Pan B.R.,2004,Molecular systematics of Tamarix and Myricaria in China inferred from ITS sequence data,Yunnan Zhiwu Yanjiu(Acta Botanica Yunnanica),26(3):283-289(华丽,张道远,潘伯荣,2004,中国柽柳属和水柏枝属的分子系统学研究,云南植物研究,26(3):283-289)
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Magallón S.,Gómez-Acevedo S.,Sánchez-Reyes L.L.,and Hernández-Hernández T.,2015,A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity,New Phytol.,207(2):437-453
Niet T.V.D.,2017,Satyrium liltvedianum:A newly discovered orchid species from the Kogelberg Mountains of the Cape Floristic Region(South Africa),South African Journal of Botany,111:126-133
Oxelman B.,Lidén M.,and Berglund D.,1997,Chloroplast rps16intron phylogeny of the tribe Sileneae(Caryophyllaceae),Plant Syst.Evol.,206(1-4):393-410
Posada D.,and Crandall K.A.,1998,Modeltest:testing the model of DNA substitution,Bioinformatics,14(9):817-818
Shao Y.,Wei R.,Zhang X.,and Xiang Q.,2015,Molecular phylogeny of the Cliff ferns(Woodsiaceae:Polypodiales)with a proposed infrageneric classification,PLoS One,10(9):e0136318
Taberlet P.,Gielly L.,Pautou G.,and Bouvet J.,1991,Universa primers for amplification of three non-coding regions of chloroplast DNA,Plant Molecular Biology,17(5):1105-1109
Wang J.,2013,Species divergence between Populus euphratica and P.pruinosa based on population genetic data,Dissertation for Ph.D.,Lanzhou University,Supervisor:Liu J.Q.,pp68-70(王娟,2013,胡杨与灰杨的物种分化研究,博士学位论文,兰州大学,导师:刘建全,pp.68-70)
Wang J.,K?llman T.,Liu J.,Guo Q.,Wu Y.,Lin K.,and Las coux M.,2014,Speciation of two desert poplar species triggered by Pleistocene climatic oscillations,Heredity,112(2):156
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Yamane K.,Yano K.,and Kawahara T.,2006,Pattern and rate of indel evolution inferred from whole chloroplast intergenic regions in sugarcane,maize and rice,DNA Research,13(5)197-204
Yang M.Z.,Ying Z.M.,and Yu J.S.,2013,Genetic structure and differentiation in the populations of Alsophila spinulosa revealed with cpDNA atp B-rbc L noncoding sequences,an example of Asphole national nature reserve in Chishui of Guizhou,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),32(2):212-215(杨明照,应站明,喻君生,2013,基于cpDNA atp B-rbc L非编码序列分析桫椤种群遗传结构和遗传多样性,以贵州赤水桫椤国家级自然保护区为例,基因组学与应用生物学,32(2):212-215)
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Bi H.,Yue W.,Wang X.,Zou J.,Li L.,Liu J.,and Sun Y.S.2016,Late Pleistocene climate change promoted divergence between Picea asperata and P.crassifoliaon the Qinghai-Tibet Plateau through recent bottlenecks,Ecology&Evolution,6(13):4435-4444
Chen M.,Liu L.D.,Zhang L.,and Wang L.J.,2012,Pollination ecological studies of Tamarix chinensis in the middle reaches of Heihe River and Yantai Seashore,Zhiwu Xuebao(Chinese Bulletin of Botany),47(3):264-270(陈敏,刘林德,张莉,王丽娟,2012,黑河中游和烟台海滨中国柽柳的传粉生态学研究,植物学报,47(3):264-270)
Correa R.P.,Lemos-Filho J.P.,Oliveira B.R.S.,Lovato M.B.,and Heuertz M.,2016,Species-specific phylogeographical patterns and Pleistocene east-west divergence in Annona(Annonaceae)in the Brazilian Cerrado,Bot.J.Linn.Soc.,181(1):21-36
Gaskin J.F.,and Schaal B.A.,2002,Hybrid Tamarix widespread in U.S.invasion and undetected in native Asian range,Proc Natl.Acad.Sci.USA,99(17):11256-11259
Hamilton M.B.,1999,Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation Molecular Ecology,8(3):521-523
Hua L.,Zhang D.Y.,and Pan B.R.,2004,Molecular systematics of Tamarix and Myricaria in China inferred from ITS sequence data,Yunnan Zhiwu Yanjiu(Acta Botanica Yunnanica),26(3):283-289(华丽,张道远,潘伯荣,2004,中国柽柳属和水柏枝属的分子系统学研究,云南植物研究,26(3):283-289)
Hultén E.,and Fries M.,1986,Atlas of north european vascular plants north of the Tropic of Cancer,Taxon,36(3):667
Kim S.,and Suh Y.,2013,Phylogeny of Magnoliaceae based on ten chloroplast DNA regions,J.Plant Biol.,56(5):290-305
Larkin M.A.,Blackshields G.,Brown N.P.,Chenna R.,Mcgettigan P.A.,Mcwilliam H.,Valentin F.,Wallace I.M.,Wilm A.,Lopez R.,Thompson J.D.,Gibson T.J.,and Higgins D.G.,2007,Clustal W and Clustal X version 2.0,Bioinformatics,23(21):2947-2948
Li Z.H.,Chen J.,Zhao G.F.,Guo Y.P.,Kou Y.X.,Ma Y.Z.,Wang G.,and Ma X.F.,2012,Response of a desert shrub to past geological and climatic change:A phylogeographic study of Reaumuria soongarica,(Tamaricaceae)in western China,Journal of Systematic and Evolution,50(4):351-361
Liu M.T.,ed.,2012,Comprehensive research on genus Tamarix plant in China,Xinjiang Science and Technology Publishing House,Urumchi,China,pp.4-10(刘铭庭,主编,2012,中国柽柳属植物综合研究图文集,新疆科学技术出版社,中国,乌鲁木齐,pp.4-10)
Liu Y.L.,Li Z.Z.,Jiang Z.W.,Liu Y.F.,and Huang H.W.,2008,Genetic structure and hybridization introgression in natural populations of two closely related Actinidia species,A.chinensis and A.deliciosa,Zhiwu Shengtai Xuebao(Journal of Plant Ecology),32(3):704-718(刘亚令,李作洲,姜正旺,刘义飞,黄宏文,2008,中华猕猴桃和美味猕猴桃自然居群遗传结构及其种间杂交渐渗,植物生态学报,32(3):704-718)
Liu J.X.,Gao T.X.,Zhuang Z.M.,Jin X.S.,Yokogawa K.,and Zhang Y.P.,2006,Late Pleistocene divergence and subsequent population expansion of two closely related fish species,Japanese anchovy(Engraulis japonicus)and Australian anchovy(Engraulis australis),Mol.Phylogenet.Evol.,40(3):712-723
Ma J.,Chen F.B.,Zhou X.R.,Wang J.H.,and Song X.H.,2014,Sequences analysis and comparison of trn L-trn F of geographical populations of Torreya fargesii(Taxaceae)and its closely related species,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),33(5):1053-1058(马俊,陈发波,周先容,汪建华,宋晓宏,2014,不同地理种群巴山榧树及近缘种叶绿体trn L-trn F序列的分析,基因组学与应用生物学,33(5):1053-1058)
Magallón S.,Gómez-Acevedo S.,Sánchez-Reyes L.L.,and Hernández-Hernández T.,2015,A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity,New Phytol.,207(2):437-453
Niet T.V.D.,2017,Satyrium liltvedianum:A newly discovered orchid species from the Kogelberg Mountains of the Cape Floristic Region(South Africa),South African Journal of Botany,111:126-133
Oxelman B.,Lidén M.,and Berglund D.,1997,Chloroplast rps16intron phylogeny of the tribe Sileneae(Caryophyllaceae),Plant Syst.Evol.,206(1-4):393-410
Posada D.,and Crandall K.A.,1998,Modeltest:testing the model of DNA substitution,Bioinformatics,14(9):817-818
Shao Y.,Wei R.,Zhang X.,and Xiang Q.,2015,Molecular phylogeny of the Cliff ferns(Woodsiaceae:Polypodiales)with a proposed infrageneric classification,PLoS One,10(9):e0136318
Taberlet P.,Gielly L.,Pautou G.,and Bouvet J.,1991,Universa primers for amplification of three non-coding regions of chloroplast DNA,Plant Molecular Biology,17(5):1105-1109
Wang J.,2013,Species divergence between Populus euphratica and P.pruinosa based on population genetic data,Dissertation for Ph.D.,Lanzhou University,Supervisor:Liu J.Q.,pp68-70(王娟,2013,胡杨与灰杨的物种分化研究,博士学位论文,兰州大学,导师:刘建全,pp.68-70)
Wang J.,K?llman T.,Liu J.,Guo Q.,Wu Y.,Lin K.,and Las coux M.,2014,Speciation of two desert poplar species triggered by Pleistocene climatic oscillations,Heredity,112(2):156
Wang Q.,Abbott R.J.,Yu Q.S.,Lin K.,and Liu J.Q.,2013,Pleistocene climate change and the origin of two desert plant species,Pugionium cornutum and Pugionium dolabratum(Brassicaceae)in northwest China,New Phytologist,199(1)277-287
Wei Y.,Tan D.Y.,and Yin L.K.,1999,The discussion on the anatomical structure of leaf and its taxonomic relationship of Tamaricaceae in China,Xibei Zhiwu Xuebao(Acta Botani ca Boreali-occidentalia Sinica),19(1):116-121,189-190(魏岩,谭敦炎,尹林克,1999,中国柽柳科植物叶解剖特征与分类关系的探讨,西北植物学报,19(1):116-121,189-190)
Xi Y.Z.,1988,Studies on pollen morphology of Tamaricaceae in China,Zhiwu Yanjiu(Bulletin of Botanical Research),8(3)23-42(席以珍,1988,中国柽柳科植物花粉形态的研究植物研究,8(3):23-42)
Yamane K.,Yano K.,and Kawahara T.,2006,Pattern and rate of indel evolution inferred from whole chloroplast intergenic regions in sugarcane,maize and rice,DNA Research,13(5)197-204
Yang M.Z.,Ying Z.M.,and Yu J.S.,2013,Genetic structure and differentiation in the populations of Alsophila spinulosa revealed with cpDNA atp B-rbc L noncoding sequences,an example of Asphole national nature reserve in Chishui of Guizhou,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),32(2):212-215(杨明照,应站明,喻君生,2013,基于cpDNA atp B-rbc L非编码序列分析桫椤种群遗传结构和遗传多样性,以贵州赤水桫椤国家级自然保护区为例,基因组学与应用生物学,32(2):212-215)
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Yin H.,Yan X.,Shi Y.,Qian C.J.,Li Z.H.,Zhang W.,Wang L.R.,Li Y.,Li X.Z.,Chen G.X.,Li X.R.,Eviatar N.,and Ma X.F.,2015,The role of East Asian monsoon system in shaping population divergence and dynamics of a constructive desert shrub Reaumuria soongarica,Scientific Reports,5:15823
Zhang D.J.,Yuan W.T.,Ma M.C.,and Liu M.C.,2014,Genetic differentiation study of chloroplast DNA trn L-F in Ribes meyeri Maxim.from Qinghai,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),33(6):1319-1323(张得钧,元王涛,马明呈,刘明成,2014,青海五裂茶藨子叶绿体DNA trn L-F序列的遗传变异研究,基因组学与应用生物学,33(6):1319-1323)
Zhang D.Y.,2004,A cladistic analysis of Tamarix from China,Yunnan Zhiwu Yanjiu(Acta Botanica Yunnanica),26(3):275-282(张道远,2004,中国柽柳属植物的分支分类研究,云南植物研究,26(3):275-282)
Zhang D.Y.,Chen Z.D.,Sun H.Y.,Yin L.K.,and Pan B.R.,2000,Systematic studies on some questions of Tamaricaceae based on ITS sequence,Xibei Zhiwu Xuebao(Acta Botanica Boreali-occidentalia Sinica),20(3):421-431(张道远,陈之端,孙海英,尹林克,潘伯荣,2000,用核糖体DNA的ITS序列探讨中国柽柳科植物系统分类中的几个问题,西北植物学报,20(3):421-431)
Zhang D.Y.,Pan B.R.,and Yin L.K.,2003,The photogeographical studies of Tamarix(Tamaricaceae),Yunnan Zhiwu Yanjiu(Acta Botanica Yunnanica),25(4):415-427(张道远,潘伯荣,尹林克,2003,柽柳科柽柳属的植物地理研究,云南植物研究,25(4):415-427)
Zhang D.Y.,Zhang J.,Tan D.Y.,and Pan B.R.,2003,Anatomical observation of young branches of 6 species of Tamaricaceae from China,Xibei Zhiwu Xuebao(Acta Botanica Boreali-occidentalia Sinica),23(3):382-388(张道远,张娟,谭敦炎,潘伯荣,2003,国产柽柳科3属6种植物营养枝的解剖观察,西北植物学报,23(3):382-388)
Zhang H.J.,2016,Species divergence between Primula chungensis and Primula cockburniana,Thesis for M.S.,University of Chinese Academy of Sciences,Supervisor:Li Q.J.,pp.1-10(张华杰,2016,中甸灯台报春和鹅黄灯台报春的物种分化研究,硕士学位论文,中国科学院大学,导师:李庆军,pp.1-10)
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Zhang Y.M.,Pan B.R.,and Yin L.K.,1998,Seed morphology of Tamaricaceae in China arid areas and its systematic evolution,Zhiwu Ziyuan Yu Huanjing(Journal of Plant Resources&Environment),7(2):23-28(张元明,潘伯荣,尹林克,1998中国干旱区柽柳科植物种子形态特征及其系统学意义植物资源与环境,7(2):23-28)
Zhang Y.M.,Pan B.R.,and Yin L.K.,2001,Pollen morphology of the Tamaricaceae from China and its taxonomic significance,Xibei Zhiwu Xuebao(Acta Botanica Boreali-Occidentalia Sinica),21(5):857-864,1061-1063(张元明,潘伯荣,尹林克,2001,中国柽柳科(Tamaricaceae)花粉形态研究及其分类意义的探讨,西北植物学报,21(5):857-8641061-1063)
Zhang M.L.,Meng H.H.,Zhang H.X.,Vyacheslav B.V.,and Sanderson S.C.,2014a,Himalayan origin and evolution of Myricaria(Tamaricaeae)in the neogene,PLoS One,9(6):e97582
Zhang M.Y.,Fritsch P.W.,Ma P.F.,Wang H.,Lu L.,and Li D.Z.,2017,Plastid phylogenomics and adaptive evolution of Gaultheria,series Trichophyllae,(Ericaceae),a clade from sky islands of the himalaya-hengduan mountains,Mol.Phylogenet.Evol.,110(1):7-18
Zhang M.,Hao X.,Sanderson S.C.,Byalt V.V.,Sukhorukov A.P.,and Zhang X.,2014b,Spatiotemporal evolution of Reaumuria(Tamaricaceae)in Central Asia:Insights from molecular biogeography,Phytotaxa,167(1):89-103
Zhao H.L.,Lu L.M.,Su J.X.,and Chen Z.D.,2015,Phylogeny of Stixeae and Borthwickiaceae based on morphological and molecular Data,Zhiwu Xuebao(Chinese Bulletin of Botany),50(4):473-481(赵慧玲,鲁丽敏,苏俊霞,陈之端,2015,基于形态和分子证据对斑果藤族和节蒴木科的系统学研究,植物学报,50(4):473-481)
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