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科尔沁牛乳腺炎临床分离无乳链球菌菌毛岛屿PI-2A辅助蛋白2基因的克隆及序列分析
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摘要
目的克隆内蒙古东部地区科尔沁牛乳腺炎无乳链球菌菌毛岛屿PI-2A辅助蛋白2(AP2)基因片段,并进行序列分析。方法根据Gen Bank中登录的牛乳腺炎无乳链球菌菌毛岛屿PI-2a辅助蛋白2基因序列,使用生物信息学软件Primer5.0设计1对特异性引物,以内蒙古东部地区乳源性无乳链球菌临床菌株总DNA为模板,扩增AP2基因片段,与p MD18-T Vector连接,转化至感受态E.coli JM109中,提取质粒,进行PCR及单、双酶切鉴定;将质粒p MD18-T-AP2转化感受态E.coli JM109后,利用DNAStar分析测序结果,并对其推导的氨基酸序列进行抗原可及性分析,Prot Scale在线程序分析其疏(亲)水性。结果质粒p MD18-T-AP2经PCR及单、双酶切鉴定,证明构建正确;扩增的AP2基因序列长度为699 bp,编码233个氨基酸残基,与Gen Bank中登录的无乳链球菌菌毛岛屿PI-2a的AP2基因核苷酸序列相似性达99%,有3个碱基出现变异(402:C-A;563:C-T;467:A-T),氨基酸序列有两处出现变异,分别为178氨基酸(V-A)和216氨基酸(E-V);该序列二级结构α折叠分布C-末端较多,β折叠较丰富,分布较均匀,无规则卷曲分布在两端,亲水性指数相对较高,抗原性较好。结论成功克隆出内蒙古东部地区牛乳腺炎无乳链球菌菌毛岛屿PI-2a辅助蛋白AP2基因,为进一步研究AP2基因编码蛋白的抗原性奠定了基础。
Purpose Cloning of bovine mastitis Streptococcus agalactiae PI-2a island accessory protein gene AP2,and sequencing.Methods According to the published PI-2a fimbriae island AP2 accessory protein gene sequences of bovine Streptococcus agalactiae on Gen Bank.A pairs of specific primers was designed with bioinformatics software of Primer5.0,and amplification of AP2 gene sequences with the Streptococcus agalactiae total DNA as the template of the Streptococcus agalactiae clinical strains form the Eastern Inner Mongolia.Result The amplified AP2 gene sequences had length 699 bp.and had 99% of similarity to AP2 gene sequences with the bovine Streptococcus agalactiae AP2 gene(EU930008) published on Gen Bank.Conclusion The result showed that successfully cloned the AP2 gene of the bovine mastitis Streptococcus agalactiae of the eastern part of Inner Mongolia of China,and laid the foundation for further study on the antigenicity of the AP2 gene coding protein.
引文
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