Metabolic dynamics analysis by massive data integration: application to tsunami-affected field soils in Japan

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• 作者：Tatsuki Ogura ; Yasuhiro Date ; Yuuri Tsuboi ; Jun Kikuchi
• 刊名：ACS Chemical Biology
• 出版年：2015
• 出版时间：August 21, 2015
• 年：2015
• 卷：10
• 期：8
• 页码：1908-1915
• 全文大小：518K
• ISSN：1554-8937

文摘

A new metabolic dynamics analysis approach has been developed in which massive data sets from time-series of ¹H and ¹³C NMR spectra are integrated in combination with microbial variability to characterize the biomass degradation process using field soil microbial communities. On the basis of correlation analyses that revealed relationships between various metabolites and bacteria, we efficiently monitored the metabolic dynamics of saccharides, amino acids, and organic acids, by assessing time-course changes in the microbial and metabolic profiles during biomass degradation. Specific bacteria were found to support specific steps of metabolic pathways in the degradation process of biomass to short chain fatty acids. We evaluated samples from agricultural and abandoned fields contaminated by the tsunami that followed the Great East earthquake in Japan. Metabolic dynamics and activities in the biomass degradation process differed considerably between soil from agricultural and abandoned fields. In particular, production levels of short chain fatty acids, such as acetate and propionate, which were considered to be produced by soil bacteria such as Sedimentibacter sp. and Coprococcus sp., were higher in the soil from agricultural fields than from abandoned fields. Our approach could characterize soil activity based on the metabolic dynamics of microbial communities in the biomass degradation process and should therefore be useful in future investigations of the environmental effects of natural disasters on soils.