Genetic Analysis of an Emerging GII.P2–GII.2 Norovirus Associated with a 2016 Outbreak of Acute Gastroenteritis in China
|
摘要
<正>Dear Editor,Noroviruses are positive-sense, single-stranded RNA viruses belonging to Caliciviridae and account for more than 50%of all acute gastroenteritis (AGE) outbreaks worldwide and cause an estimated 200,000 deaths per year among children\5 years of age, primarily in developing countries (Hall et al. 2012; Glass et al. 2009). The norovirus genome contains three open reading frames (ORFs).
引文
Ao Y,Wang J,Ling H,He Y,Dong X,Wang X,Peng J,Zhang H,Jin M,Duan Z(2017)Norovirus GII.P16/GII.2-associated gastroenteritis,China,2016.Emerg Infect Dis 23:1172-1175
Ao Y,Cong X,Jin M,Sun X,Wei X,Wang J,Zhang Q,Song J,Yu J,Cui J,Qi J,Tan M,Duan Z(2018)Genetic analysis of reemerging GII.P16-GII.2 noroviruses in 2016-2017 in China.J Infect Dis 218:133-143
Bidalot M,Thery L,Kaplon J,De Rougemont A,Ambert-Balay K(2016)Emergence of new recombinant noroviruses GII.p16-GII.4 and GII.p16-GII.2,France,winter 2016 to 2017.Euro Surveill 22.pii:30508
Cannon JL,Barclay L,Collins NR,Wikswo ME,Castro CJ,Magana LC,Gregoricus N,Marine RL,Chhabra P,Vinje J(2017)Genetic and epidemiologic trends of norovirus outbreaks in the United States from 2013 to 2016 demonstrated emergence of novel GII.4 recombinant viruses.J Clin Microbiol 55:2208-2221
Chan MC,Lee N,Hung TN,Kwok K,Cheung K,Tin EK,Lai RW,Nelson EA,Leung TF,Chan PK(2015)Rapid emergence and predominance of a broadly recognizing and fast-evolving norovirus GII.17 variant in late 2014.Nat Commun 6:10061
Eden JS,Tanaka MM,Boni MF,Rawlinson WD,White PA(2013)Recombination within the pandemic norovirus GII.4 lineage.J Virol 87:6270-6282
Glass RI,Parashar UD,Estes MK(2009)Norovirus gastroenteritis.N Engl J Med 361:1776-1785
Hall AJ,Eisenbart VG,Etingue AL,Gould LH,Lopman BA,Parashar UD(2012)Epidemiology of foodborne norovirus outbreaks,United States,2001-2008.Emerg Infect Dis18:1566-1573
Lindesmith LC,Beltramello M,Donaldson EF,Corti D,Swanstrom J,Debbink K,Lanzavecchia A,Baric RS(2012)Immunogenetic mechanisms driving norovirus GII.4 antigenic variation.PLoSPathog 8:e1002705
Mizukoshi F,Nagasawa K,Doan YH,Haga K,Yoshizumi S,Ueki Y,Shinohara M,Ishikawa M,Sakon N,Shigemoto N,OkamotoNakagawa R,Ochi A,Murakami K,Ryo A,Suzuki Y,Katayama K,Kimura H(2017)Molecular evolution of the RNA-dependent RNA polymerase and capsid genes of human norovirus genotype GII.2 in Japan during 2004-2015.Front Microbiol 8:705
Niendorf S,Jacobsen S,Faber M,Eis-Hubinger AM,Hofmann J,Zimmermann O,Hohne M,Bock CT(2017)Steep rise in norovirus cases and emergence of a new recombinant strain GII.P16-GII.2,Germany,winter 2016.Euro Surveill22.pii:30447
Parra GI,Squires RB,Karangwa CK,Johnson JA,Lepore CJ,Sosnovtsev SV,Green KY(2017)Static and evolving norovirus genotypes:implications for epidemiology and immunity.PLoSPathog 13:e1006136
Thongprachum A,Okitsu S,Khamrin P,Maneekarn N,Hayakawa S,Ushijima H(2017)Emergence of norovirus GII.2 and its novel recombination during the gastroenteritis outbreak in Japanese children in mid-2016.Infect Genet Evol 51:86-88
Tohma K,Lepore CJ,Ford-Siltz LA,Parra GI(2017)Phylogenetic analyses suggest that factors other than the capsid protein play a role in the epidemic potential of GII.2 norovirus.mSphere2.pii:e00187-17
VinjeJ(2015)Advances in laboratory methods for detection and typing of norovirus.J Clin Microbiol 53:373-381
Ao Y,Cong X,Jin M,Sun X,Wei X,Wang J,Zhang Q,Song J,Yu J,Cui J,Qi J,Tan M,Duan Z(2018)Genetic analysis of reemerging GII.P16-GII.2 noroviruses in 2016-2017 in China.J Infect Dis 218:133-143
Bidalot M,Thery L,Kaplon J,De Rougemont A,Ambert-Balay K(2016)Emergence of new recombinant noroviruses GII.p16-GII.4 and GII.p16-GII.2,France,winter 2016 to 2017.Euro Surveill 22.pii:30508
Cannon JL,Barclay L,Collins NR,Wikswo ME,Castro CJ,Magana LC,Gregoricus N,Marine RL,Chhabra P,Vinje J(2017)Genetic and epidemiologic trends of norovirus outbreaks in the United States from 2013 to 2016 demonstrated emergence of novel GII.4 recombinant viruses.J Clin Microbiol 55:2208-2221
Chan MC,Lee N,Hung TN,Kwok K,Cheung K,Tin EK,Lai RW,Nelson EA,Leung TF,Chan PK(2015)Rapid emergence and predominance of a broadly recognizing and fast-evolving norovirus GII.17 variant in late 2014.Nat Commun 6:10061
Eden JS,Tanaka MM,Boni MF,Rawlinson WD,White PA(2013)Recombination within the pandemic norovirus GII.4 lineage.J Virol 87:6270-6282
Glass RI,Parashar UD,Estes MK(2009)Norovirus gastroenteritis.N Engl J Med 361:1776-1785
Hall AJ,Eisenbart VG,Etingue AL,Gould LH,Lopman BA,Parashar UD(2012)Epidemiology of foodborne norovirus outbreaks,United States,2001-2008.Emerg Infect Dis18:1566-1573
Lindesmith LC,Beltramello M,Donaldson EF,Corti D,Swanstrom J,Debbink K,Lanzavecchia A,Baric RS(2012)Immunogenetic mechanisms driving norovirus GII.4 antigenic variation.PLoSPathog 8:e1002705
Mizukoshi F,Nagasawa K,Doan YH,Haga K,Yoshizumi S,Ueki Y,Shinohara M,Ishikawa M,Sakon N,Shigemoto N,OkamotoNakagawa R,Ochi A,Murakami K,Ryo A,Suzuki Y,Katayama K,Kimura H(2017)Molecular evolution of the RNA-dependent RNA polymerase and capsid genes of human norovirus genotype GII.2 in Japan during 2004-2015.Front Microbiol 8:705
Niendorf S,Jacobsen S,Faber M,Eis-Hubinger AM,Hofmann J,Zimmermann O,Hohne M,Bock CT(2017)Steep rise in norovirus cases and emergence of a new recombinant strain GII.P16-GII.2,Germany,winter 2016.Euro Surveill22.pii:30447
Parra GI,Squires RB,Karangwa CK,Johnson JA,Lepore CJ,Sosnovtsev SV,Green KY(2017)Static and evolving norovirus genotypes:implications for epidemiology and immunity.PLoSPathog 13:e1006136
Thongprachum A,Okitsu S,Khamrin P,Maneekarn N,Hayakawa S,Ushijima H(2017)Emergence of norovirus GII.2 and its novel recombination during the gastroenteritis outbreak in Japanese children in mid-2016.Infect Genet Evol 51:86-88
Tohma K,Lepore CJ,Ford-Siltz LA,Parra GI(2017)Phylogenetic analyses suggest that factors other than the capsid protein play a role in the epidemic potential of GII.2 norovirus.mSphere2.pii:e00187-17
VinjeJ(2015)Advances in laboratory methods for detection and typing of norovirus.J Clin Microbiol 53:373-381