Analysis of Gene Expression Profiles of Rice Mutant SLR1 Based on Microarray Data
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摘要
Gibberellins are an important class of plant hormones.They play an important regulatory role in all stages of growth and development of higher plants.The use of mutants to study gibberellin metabolism and signal transduction pathways is currently a research hotspot.This article takes the data of Affymetrix chips of rice as an example,bioinformatics method was used to study rice SLR1 mutant and mine differentially expressed wild-type genes,thus exploring the expression regulation network of gibberellin signaling pathway-related genes.
Gibberellins are an important class of plant hormones.They play an important regulatory role in all stages of growth and development of higher plants.The use of mutants to study gibberellin metabolism and signal transduction pathways is currently a research hotspot.This article takes the data of Affymetrix chips of rice as an example,bioinformatics method was used to study rice SLR1 mutant and mine differentially expressed wild-type genes,thus exploring the expression regulation network of gibberellin signaling pathway-related genes.
Gibberellins are an important class of plant hormones.They play an important regulatory role in all stages of growth and development of higher plants.The use of mutants to study gibberellin metabolism and signal transduction pathways is currently a research hotspot.This article takes the data of Affymetrix chips of rice as an example,bioinformatics method was used to study rice SLR1 mutant and mine differentially expressed wild-type genes,thus exploring the expression regulation network of gibberellin signaling pathway-related genes.
引文
[1]THOMAS SG,SUN TP.Update on gibberellin signaling.A tale of the tall and the short[J].Plant Physiology,2004,135(2):668-676.
[2]PENG J,HARBERD NP.The role of GA-mediated signalling in the control of seed germination[J].Current Opinion in Plant Biology,2002,5(11):376-381.
[3]BINENBAUM J,WEINSTAIN R,SHANI E.Gibberellin localization and transport in plants[J].Trends Plant Science,2018,23(5):410-421.
[4]UEGUCHI-TANAKA M,ASHIKARI M,NAKAJIMA M,et al.GIB-BERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin[J].Nature,2005,437(11):693-698.
[5]UEGUCHI-TANAKA M,NAKAJIMA M,MOTOYUKI A,et al.Gibberellin receptor and its role in gibberellin signaling in plants[J].Annual Review of Plant Biology,2007,58(3):183-198.
[6]FLEET CM,SUN TP.A dellacate balance:the role of gibberellin in plant morphogenesis[J].Current Opinion in Plant Biology,2005,8(1):77-85.
[7]SUN TP,GUBLER F.Molecular mechanism of gibberellin signaling in plants[J].Annual Review of Plant Biology,2004,55(5):197-223.
[8]GOMI K,SASAKI A,ITOH H,et al.GID2,an F-box subunit of the SCF E3complex,specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice[J].The Plant Journal,2004,37(4):626-634.
[9]KOJIMA M,KAMADA-NOBUSADA T,KOMATSU H,et al.Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry:an application for hormone profiling in Oryza sativa[J].Plant Cell Physiology,2009,50(7):1201-1214.
[10]HEDDEN P.The genes of the green revolution[J].Trends in Genetics,2003,19(1):5-9.
[11]SASAKI A,ASHIKARI M,UEGUCHI-TANAKA M,et al.Green revolution:a mutant gibberellin-synthesis gene in rice[J].Nature,2002,416(6882):701-702.
[12]PENG J,RICHARDS DE,HARTLEY NM,et al.‘Green revolution’genes encode mutant gibberellin response modulators[J].Nature,1999,400(6741):256-261.
[13]IKEDA A,UEGUCHI-TANAKA M,SONODA Y,et al.Slender rice,a constitutive gibberellin response mutant,is caused by a null mutation of the SLR1 gene,an ortholog of the height-regulating gene GAI/RGA/RHT/D8[J].The Plant Cell,2001,13(5):999-1010.
[14]LI S,TIAN Y,WU K,et al.Modulating plant growth-metabolism coordination for sustainable agriculture[J].Nature,2018,560(14):595-600.
[2]PENG J,HARBERD NP.The role of GA-mediated signalling in the control of seed germination[J].Current Opinion in Plant Biology,2002,5(11):376-381.
[3]BINENBAUM J,WEINSTAIN R,SHANI E.Gibberellin localization and transport in plants[J].Trends Plant Science,2018,23(5):410-421.
[4]UEGUCHI-TANAKA M,ASHIKARI M,NAKAJIMA M,et al.GIB-BERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin[J].Nature,2005,437(11):693-698.
[5]UEGUCHI-TANAKA M,NAKAJIMA M,MOTOYUKI A,et al.Gibberellin receptor and its role in gibberellin signaling in plants[J].Annual Review of Plant Biology,2007,58(3):183-198.
[6]FLEET CM,SUN TP.A dellacate balance:the role of gibberellin in plant morphogenesis[J].Current Opinion in Plant Biology,2005,8(1):77-85.
[7]SUN TP,GUBLER F.Molecular mechanism of gibberellin signaling in plants[J].Annual Review of Plant Biology,2004,55(5):197-223.
[8]GOMI K,SASAKI A,ITOH H,et al.GID2,an F-box subunit of the SCF E3complex,specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice[J].The Plant Journal,2004,37(4):626-634.
[9]KOJIMA M,KAMADA-NOBUSADA T,KOMATSU H,et al.Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry:an application for hormone profiling in Oryza sativa[J].Plant Cell Physiology,2009,50(7):1201-1214.
[10]HEDDEN P.The genes of the green revolution[J].Trends in Genetics,2003,19(1):5-9.
[11]SASAKI A,ASHIKARI M,UEGUCHI-TANAKA M,et al.Green revolution:a mutant gibberellin-synthesis gene in rice[J].Nature,2002,416(6882):701-702.
[12]PENG J,RICHARDS DE,HARTLEY NM,et al.‘Green revolution’genes encode mutant gibberellin response modulators[J].Nature,1999,400(6741):256-261.
[13]IKEDA A,UEGUCHI-TANAKA M,SONODA Y,et al.Slender rice,a constitutive gibberellin response mutant,is caused by a null mutation of the SLR1 gene,an ortholog of the height-regulating gene GAI/RGA/RHT/D8[J].The Plant Cell,2001,13(5):999-1010.
[14]LI S,TIAN Y,WU K,et al.Modulating plant growth-metabolism coordination for sustainable agriculture[J].Nature,2018,560(14):595-600.