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香椿染色体核型分析及SSR分子标记开发
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  • 英文篇名:Chromosome Karyotype Analysis and Development of SSR Molecular Markers in Toona sinensis
  • 作者:于鹏飞 ; 孙晓健 ; 李晨晨 ; 张旭 ; 郑威 ; 刘常金
  • 英文作者:YU Pengfei;SUN Xiaojian;LI Chenchen;ZHANG Xu;ZHENG Wei;LIU Changjin;Institute of New Rural Development,Tianjin University of Science & Technology;College of Food Engineering and Biotechnology,Tianjin University of Science & Technology;
  • 关键词:香椿 ; 染色体 ; 核型分析 ; SSR ; 转录组
  • 英文关键词:Toona sinensis;;chromosome;;karyotype analysis;;SSR;;transcriptome
  • 中文刊名:YYXB
  • 英文刊名:Acta Horticulturae Sinica
  • 机构:天津科技大学新农村发展研究院;天津科技大学食品工程与生物技术学院;
  • 出版日期:2019-06-25
  • 出版单位:园艺学报
  • 年:2019
  • 期:v.46
  • 基金:天津科技大学新农村研究发展研究院开放课题(xnc201705)
  • 语种:中文;
  • 页:YYXB201906014
  • 页数:11
  • CN:06
  • ISSN:11-1924/S
  • 分类号:158-168
摘要
对香椿进行染色体核型分析和SSR分子标记的开发。染色体核型分析发现两个居群的香椿染色体数都是56条,为2A型,香椿的染色体较为原始,变异较小。转录组测序结果共获得66921条Unigene,从中检索得到13 324个SSR位点,分布于11 184条Unigene中,SSR出现频率为19.91%,平均分布距离为3.84 kb。优势重复基序为单核苷酸、二核苷酸和三核苷酸,分别占SSR总数的62.33%、19.66%和15.99%,单核苷酸A/T为优势重复基元,占总SSR的62.23%,二核苷酸以AG/CT为主要重复基元,占总位点的10.31%,三核苷酸以AAG/CTT为主要重复基元,占4.85%。利用Primer 3.0设计了8 218对引物,随机选取了19对引物对17个香椿种质进行PCR扩增,6对引物显示出可重复的多态性。
        Chromosome karyotype analysis and SSR molecular marker development of Toona sinensis were conducted. The karyotype analysis result showed that the number of chromosomes in both populations was 2 n = 56,and all of karyotypes for the populations was 2 A type,the chromosome of T.sinensis was relatively primitive with little variation. 66 921 Unigenes were obtained by transcriptome sequencing analysis from T. sinensis. A total of 13 324 SSRs were identified from 11 184 Unigenes. The frequency of SSRs from these Unigenes was 19.91%,and the mean distribution distance of loci was 3.84 kb. Meanwhile,the major types such as mononucleotide,dinucleotide and trinucleotide accounted for62.33%,19.66% and 15.99%,respectively. Furthermore,A/T was the predominant mononucleotide repeat type(62.23%),AG/CT was the predominant dinucleotide repeat type(10.31%),and AAG/CTT was the predominant trinucleotide repeat type(4.85%). 8 218 pairs of SSR primers were found by Primer 3.0.Randomly 19 pairs of primers were selected for PCR amplification by 17 T. sinensis samples,and 6 PCR products showed clear and reproducible results indicating the polymorphism among these samples.
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