国外机构科研数据知识库研究进展
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摘要
在e-Science和e-Research环境下,通过建立科研数据知识库对高校及其他研究机构的科研数据进行有效管理以促进机构内与机构间数据共享与学术交流,已逐渐成为近年来国外科研数据管理领域关注的课题。本研究以Web of Science、SpringerLink、ScienceDirect、Emeraldinsight、EBSCOhost以及ProQuest Research Library等数据库收录的文献为基础,探讨国外机构科研数据知识库(Institutional Research Data Repository,IRDR)研究的最新进展。国外该领域的研究主要涉及:机构知识库在科研数据管理中的作用、IRDR建设的需求与实践、IRDR的管理、IRDR的数据存储、IRDR的数据组织与检索、IRDR的数据出版以及IRDR联盟。目前,国外IRDR研究呈现出以下特点:IRDR研究受到多个领域的关注、研究成果具有较强的实践指导性、注重IRDR的生命周期管理、IRDR联盟成为发展趋势。针对我国在该领域现有研究的一些问题,未来研究应重点关注IRDR理论研究的系统化、平台的建设与管理、面向科研人员服务的开展、知识产权研究及联盟机制的深入探索。
In the era of e-Science and e-Research, it has been a growing concern in the field of research data management abroad to effectively manage research data by establishing research data repositories, both within and across universities and other research institutions, to promote data sharing and scholarly communication. This paper adopts Web of Science(Wo S), SpringerLink, ScienceDirect, Emeraldinsight, EBSCOhost, and ProQuest Research Library as the main data sources to conduct a systematic review on the latest progress of institutional research data repositories(IRDRs) overseas. It is shown that research on IRDR has mainly focused on the role of institutional repositories in the course of research data management, the needs and practice of IRDR development, the management of IRDRs, data storage in IRDRs, data organization and retrieval in IRDRs, data publishing of IRDRs, and the federation of IRDRs. Based on the literature analysis, it has become clear that research on IRDRs covers various research topics, presents strong practice guidance, and highlights the life-cycle management of IRDRs; besides, it is clear that the federation of IRDR has become a trend. On the basis of the findings, the future study of institutional research data repositories in China should focus on the systematization of theoretical study, the development and management of platforms, the conduction of related services for researchers, the further exploration of intellectual property, and research on the mechanism of IRDR federation.
In the era of e-Science and e-Research, it has been a growing concern in the field of research data management abroad to effectively manage research data by establishing research data repositories, both within and across universities and other research institutions, to promote data sharing and scholarly communication. This paper adopts Web of Science(Wo S), SpringerLink, ScienceDirect, Emeraldinsight, EBSCOhost, and ProQuest Research Library as the main data sources to conduct a systematic review on the latest progress of institutional research data repositories(IRDRs) overseas. It is shown that research on IRDR has mainly focused on the role of institutional repositories in the course of research data management, the needs and practice of IRDR development, the management of IRDRs, data storage in IRDRs, data organization and retrieval in IRDRs, data publishing of IRDRs, and the federation of IRDRs. Based on the literature analysis, it has become clear that research on IRDRs covers various research topics, presents strong practice guidance, and highlights the life-cycle management of IRDRs; besides, it is clear that the federation of IRDR has become a trend. On the basis of the findings, the future study of institutional research data repositories in China should focus on the systematization of theoretical study, the development and management of platforms, the conduction of related services for researchers, the further exploration of intellectual property, and research on the mechanism of IRDR federation.
引文
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(1)微阵列是人类基因组计划的逐步实施和分子生物学的迅猛发展及运用的产物,融微电子学、生命科学、计算机科学和光电化学为一体,是第三次革命(基因组革命)的主要技术之一;微阵列实验能同时大量地、全面性地侦测上万个基因的表达量,通过基因芯片在短时间内找出可能受疾病影响的基因,可作为早期诊断的生物标记(biomarker)。
(1)为保护隐私,德国颁布的相关数据保护法规要求机构知识库在存储数据时,需要移除病人的受保护的健康医疗信息(Protected Health Information,PHI)。
[2]Carlson S.Lost in a sea of science data[EB/OL].[2016-10-15].http://sdl.syr.edu/course/week1/1_Introduction To The Course_Carl son_2006.pdf.
[3]NSF.Data management plan[EB/OL].[2016-10-15].http://www.bu.edu/datamanagement/outline/funding-agencies/#nsf.
[4]Nature.Data policies[EB/OL].[2016-10-15].http://www.nature.com/sdata/data-policies.
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[11]National Science Foundation.Dissemination and sharing of research results[EB/OL].[2016-10-15].http://www.nsf.gov/bfa/dias/policy/dmp.jsp.
[12]Shreeves S L,Cragin M H.Introduction:Institutional repositories:Current state and future[J].Library Trends,2008,57(2):89-97.
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[19]Kim Y,Kim S.Institutional,motivational,and resource factors influencing health scientists’data-sharing behaviours[J].Journal of Scholarly Publishing,2015,46(4):366-389.
[20]Kim Y,Adler M.Social scientists’data sharing behaviors:Investigating the roles of individual motivations,institutional pressures,and data repositories[J].International Journal of Information Management,2015,35(4):408-418.
[21]Schwartz A,Pappas C,Sandlow L J.Data repositories for medical education research:issues and recommendations[J].Academic Medicine:Journal of the Association of American Medical Colleges,2010,85(5):837-843.
[22]Diekema A R,Wesolek A,Walters C D.The NSF/NIH effect:surveying the effect of data management requirements on faculty,sponsored programs,and institutional repositories[J].The Journal of Academic Librarianship,2014,40(3-4):322-331.
[23]Vizcaíno J A,Foster J M,Martens L.Proteomics data repositories:Providing a safe haven for your data and acting as a springboard for further research[J].Journal of Proteomics,2010,73(11):2136-2146.
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[27]Franke T,Gruetza R,Dickmanna F.Functional requirements for a central research imaging data repository[J].Studies in Health Technology&Informatics,2013,192(1):298-302.
[28]Mc Kay D.Oranges are not the only fruit:an institutional case study demonstrating why data digital libraries are not the whole answer to e-research[C]//Proceedings of the Role of Digital Libraries in a Time of Global Change,and 12th International Conference on Asia-Pacific Digital Libraries.Heidelberg:SpringerVerlag,2010:236-249.
[29]Wilson J A J,Martinez-Uribe L,Fraser M A,et al.An institutional approach to developing research data management infrastructure[J].International Journal of Digital Curation,2011,6(2):274-287.
[30]Angus W.Improving research visibility—getting data on the institutional repository RADAR[EB/OL].[2016-10-15].http://www.dcc.ac.uk/resources/developing-rdm-services/repository-radar.
[31]Lee D J,Stvilia B.Data curation practices in institutional repositories:an exploratory study[J].Proceedings of the American Society for Information Science&Technology,2014,51(1):1-4.
[32]Owonibi M,Koenig-Ries B.A quality management workflow proposal for a biodiversity data repository[C]//Proceedings of International Conference on Conceptual Modeling.Cham:Springer International Publishing,2014:157-167.
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[35]Burton A,Treloar A.Designing for discovery and re-use:the‘ANDS Data Sharing Verbs’approach to service decomposition[J].International Journal of Digital curation,2009,4(3):44-56.
[36]Witt M.Institutional repositories and research data curation in a distributed environment[J].Library Trends,2008,57(2):191-201.
[37]Johnston L.Curating research data in DRUM:A workflow and distributed staffing model for institutional data repositories[EB/OL].[2016-10-15].http://escholarship.umassmed.edu/escience_symposium/2016/posters/17/.
[38]曹锦丹,徐坤.e-science环境下科研数据研究现状与发展趋势[J].情报科学,2014,32(2):58-62.
[39]Perry C M.Archiving of publicly funded research data:A survey of Canadian researchers[J].Government Information Quarterly,2008,25(1):133-148.
[40]Downing J,Murray-Rust P,Tonge A P,et al.SPECTRa:the deposition and validation of primary chemistry research data in digital repositories[J].Journal of Chemical Information and Modeling,2008,48(8):1571-1581.
[41]Shin D D,Ozyurt I B,Brown G G,et al.The Cerebral Blood Flow Biomedical Informatics Research Network(CBFBIRN)data repository[J].Neuro Image,2016,124(Pt B):1202-1207.
[42]Dima E,Henrich V,Hinrichs E,et al.A repository for the sustainable management of research data[EB/OL].[2016-10-15].http://www.lrec-conf.org/proceedings/lrec2012/pdf/470_Paper.pdf.
[43]Andrew T,David G,Cathrine H.The data curation continuum:managing data objects in institutional repositories[EB/OL].[2016-10-15].http://www.chinalibs.net/Upload/Pusfile/2010/7/12/401631663.pdf.
[44]Choudhury G.Case study in data curation at Johns Hopkins University[J].Library Trends,2008,57(2):211-220.
[45]Gutteridge C.Using the institutional repository to publish research data[EB/OL].[2016-10-15].http://eprints.soton.ac.uk/270885/.
[46]Drury C,Sefton P,Watson K.Ready or not here it comes:Australian institutional research repository data readiness surveys2010[EB/OL].[2016-10-15].http://biecoll.ub.uni-bielefeld.de/frontdoor.php?source_opus=5098&la=en.
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(1)为保护隐私,德国颁布的相关数据保护法规要求机构知识库在存储数据时,需要移除病人的受保护的健康医疗信息(Protected Health Information,PHI)。