Mitotype-specific sequences related to cytoplasmic male sterility in Oryza species

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• 作者：Hongwei Xie (1) (2)
  Jie Wang (1)
  Mingjuan Qian (1)
  Nengwu Li (1)
  Yingguo Zhu (1)
  Shaoqing Li (1)
  
• 关键词：Mitotype ; specific sequence ; Cytoplasmic male sterility ; Mitochondria ; Molecular marker ; Oryza species
• 刊名：Molecular Breeding
• 出版年：2014
• 出版时间：April 2014
• 年：2014
• 卷：33
• 期：4
• 页码：803-811
• 全文大小：1,678 KB
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• 作者单位：Hongwei Xie (1) (2)
  Jie Wang (1)
  Mingjuan Qian (1)
  Nengwu Li (1)
  Yingguo Zhu (1)
  Shaoqing Li (1)
  
  1. State Key Laboratory for Hybrid Rice, College of Life Science, Wuhan University, Wuhan, 430072, China
  2. Jiangxi Super-rice Research and Development Center, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200, China
  
• ISSN：1572-9788

文摘

Plant mitochondrial genomes contain a large number of mitotype-specific sequences (MSS) which establish a mitochondrial genome structure distinct from other mitotypes. In rice, nine mitochondrial genomes have been sequenced, which provides us with the possibility of characterizing the MSS of rice and probing their relationship to cytoplasmic male sterility (CMS) in rice. We therefore analyzed the mitochondrial genomes of CW-CMS, LD-CMS, WA-CMS, N and Nipponbare lines, and found 57 MSS with sizes ranging from 102 to 5,745?bp, and with an aggregate length of 92.4?kb. The MSS account for more than 14.5?% of the rice mitochondrial genome and are a significant contributing factor in the variation of mitochondrial genome sizes. Of the MSS tested, 34 MSS exhibited polymorphism among rice lines, and 14 MSS were further confirmed as being specific to CMS. This includes nine MSS specific to sporophytic CMS, three specific to gametophytic CMS, and two shared by all types of CMS. Interestingly, except for CMS genes orf(H)79 and orf352 which are partly or fully overlapping with some MSS fragments, there are ten more open reading frames of unknown function that were detected in CMS-specific MSS, hinting at their possible roles in plant CMS. These novel findings provide us with potential new molecular tools to direct the breeding of CMS lines in hybrid rice breeding programs.